DESCR

A Sequence Cleanup Program. Lucy is a utility that prepares raw DNA
sequence fragments for sequence assembly,possibly using the TIGR
Assembler. The cleanup process includes quality assessment,
confidence reassurance, vector trimming and vector removal. The
primary advantage of Lucy over other similar utilities is that it is a
fully integrated, stand alone program.

Makefile

# $NetBSD: Makefile,v 1.6 2009/06/12 19:07:29 rillig Exp $
#

DISTNAME= lucy-1.18p
CATEGORIES= biology
MASTER_SITES= # ftp://ftp.tigr.org/pub/software/Lucy/

MAINTAINER= dprice@cs.nmsu.edu
HOMEPAGE= http://lucy.sourceforge.net/
COMMENT= Sequence Cleanup Program

PKG_INSTALLATION_TYPES= overwrite pkgviews
PKG_DESTDIR_SUPPORT= user-destdir

AUTO_MKDIRS= yes

do-install:
${INSTALL_PROGRAM} ${WRKSRC}/lucy ${DESTDIR}${PREFIX}/bin
${INSTALL_DATA} ${WRKSRC}/lucy.1 ${DESTDIR}${PREFIX}/${PKGMANDIR}/man1
cd ${WRKSRC} && ${INSTALL_DATA} PUC19 PUC19splice PUC19splice.for \
PUC19splice.rev atie.seq atie.qul atie.2nd pSPORT1splice \
pSPORT1vector ARMTM40TR.seq ARMTM40TR.qul lucy.ps lucy.debug \
${DESTDIR}${PREFIX}/share/examples/lucy

.include "../../mk/pthread.buildlink3.mk"
.include "../../mk/bsd.pkg.mk"

PLIST

@comment $NetBSD: PLIST,v 1.3 2009/06/14 17:34:34 joerg Exp $
bin/lucy
man/man1/lucy.1
share/examples/lucy/ARMTM40TR.qul
share/examples/lucy/ARMTM40TR.seq
share/examples/lucy/PUC19
share/examples/lucy/PUC19splice
share/examples/lucy/PUC19splice.for
share/examples/lucy/PUC19splice.rev
share/examples/lucy/atie.2nd
share/examples/lucy/atie.qul
share/examples/lucy/atie.seq
share/examples/lucy/lucy.debug
share/examples/lucy/lucy.ps
share/examples/lucy/pSPORT1splice
share/examples/lucy/pSPORT1vector

distinfo

$NetBSD: distinfo,v 1.3 2005/12/13 15:24:09 joerg Exp $

SHA1 (lucy-1.18p.tar.gz) = 93ff9002f7eb69815497633007952ede9ca63e66
RMD160 (lucy-1.18p.tar.gz) = db6f8dd8d3fdab81bfcc7f1a4f558fd908c6d309
Size (lucy-1.18p.tar.gz) = 1456857 bytes
SHA1 (patch-aa) = 2e37aaf7cad62d0183f8555b4f2bd8824b10468b
SHA1 (patch-ab) = 638e512be7fc526cbd37950f9156ccab46b9f228